Tarbase database
WebTarBase v.8 - NEW! A database of experimentally supported miRNA:gene interactions. microT-CDS - UPDATED! Search for targets of annotated miRNAs based on the popular microT-CDS algorithm. MirPath v.3 A miRNA pathway analysis Web server. LncBase v.2 Elaborated info for predicted & exp. verified miRNA-lncRNA interactions. Automated … Web"StarBase: A database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data". Nucleic Acids Research. 39 (Database issue): …
Tarbase database
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WebMar 29, 2024 · Based on the TarBase database, EpimiRBase database and the high-throughput sequencing dataset GSE99455, miRNA-mRNA regulatory network was constructed from selected miRNAs and their corresponding target genes from the identified DEGs. Finally, the rats were selected to construct chronic li-pilocarpine epilepsy model … http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=site/page&view=old_versions
WebThe miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). WebDIANA tools - TarBase v.8. TarBase v.8. This license is for scientific non-profit and non-commercial use only. Any other use requires prior consent from the DIANA-lab. …
WebNov 1, 2010 · Database names TarBase (9) miRecords (10) miR2Disease (11) miRTarBase Support species Metazoa 6 Metazoa 9 Human Metazoa 9 Viridiplantae Viruses 2 Viridiplantae 3 WebTarBase Expert Database TarBase a collection of manually curated experimentally validated miRNA-gene interactions. Overview. 1,291 RNA sequences from 2 organisms …
WebNov 21, 2014 · DIANA-TarBase currently indexes more than half a million entries, 9–250 times more than any other relevant database. All entries are accompanied with rich detailed meta-data that can also be used as search and filtering terms …
Web21 hours ago · A validation cohort (n = 375) was retrieved from the NCBI Gene Expression Omnibus database with accession number (GSE15008). This cohort contains 187 lung cancer tumor tissue samples and 188 normal lung tissue samples, most of which were from adjacent normal match tissues. ... TarBase is a comprehensive database that provides … chent29 whut.edu.cnWebNov 16, 2024 · DIANA-Tarbase v8.0 is the first new version since the tenth anniversary of the database inauguration and showcases the continuous effort of indexing hundreds of … chentabWebMay 25, 2024 · The microRNA‐DEG pairs were identified through network analysis of 20 DEGs using the TarBase, miRTarBase and miRecords databases. Ultimately, a total of 64 associations between 25 microRNAs and only 18 DEGs were identified, and then the network was visualized in Cytoscape . THBS1 regulated 8 interacting microRNAs, hsa-let … chen sydney x mdWebThis miRNA sequence is 20 nucleotides long and is found in Homo sapiens. Annotated by 6 databases (ENA, RefSeq, GeneCards, miRBase, LncBase, TarBase). Homo sapiens (human) hsa-miR-4701-3p sequence is a product of miR-4701-3p, hsa-miR-4701-3p, MIR4701, hsa-miR-4701, miR-4701 genes. Found in the Homo sapiens reference … chens wok zebulon road macon gaWebAug 15, 2014 · Here, based on lncRNA microarray data of gastric cancer, bioinformatic algorithm miRcode and microRNA (miRNA) targets database TarBase, we first constructed an lncRNA-miRNA-mRNA network. chens westerly r iWebDec 29, 2024 · TarBase中将实验证据分成了low和high两类，low代表的是传统的实验手段，相对高通量测序的分析结果，该结果的可靠性更高一点，我们可以通过筛选low方法支 … chen sunny\\u0027s carry out dcWebThis lncRNA sequence is 578 nucleotides long and is found in Homo sapiens. Annotated by 7 databases (Ensembl, ENA, GeneCards, Ensembl/GENCODE, LncBook, MalaCards, LNCipedia). Homo sapiens (human) long intergenic non-protein coding RNA 662 sequence is a product of HSALNG0125113, LINC00662, ENSG00000261824.8 genes. Found in the … chent093 avic.com