WebNov 23, 2024 · GPUs are now the main workhorse of majority of supercomputers and data centers to accelerate key applications. Clara Parabricks overview NVIDIA introduced the … WebIn this work, we accelerate BWA-MEM on the Convey HC2ex platform, consisting of an 8-core Intel Xeon based host processor connected to a co-processor with four Xilinx Virtex-6 FPGAs. No work has been reported in the literature about the acceleration of BWA-MEM. Numerous works are published on the acceleration of other read alignment algorithms.

GPU-Accelerated BWA-MEM Genomic Mapping …

WebJul 25, 2016 · BWA-MEM is the de-facto industry-standard for the mapping stage. Here, a GPU-accelerated implementation of BWA-MEM is proposed. The Seed Extension … WebApr 4, 2016 · Here, a GPU-accelerated implementation of BWA-MEM is proposed. The Seed Extension phase, one of the three main BWA-MEM algorithm phases that requires … hotels near marinas in houston area

Hardware acceleration of BWA-MEM genomic short read …

http://ce-publications.et.tudelft.nl/publications/1536_an_efficient_gpuaccelerated_implementation_of_genomic_shor.pdf WebGPU-Accelerated BWT Construction for Large Collection of Short Reads. ... (GPU, a relative cheap device providing a thousand or more primitive cores), as well as simultaneously the parallelism from a multi-core CPU and more interestingly, from a cluster of GPU-enabled nodes. Using CX1, the BWT of a short-read collection of up to 100 … WebApr 4, 2016 · Three accelerated implementations of the widely used BWA-MEM genomic mapping tool are compared as a case study on design-time optimization for heterogeneous architectures, each using an optimized Smith-Waterman algorithm implementation. 3 View 1 … hotels near marina green long beach ca